PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G124600.1
Common NameB456_009G124600, LOC105765939
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 272aa    MW: 29555.8 Da    PI: 8.4851
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G124600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00022107129123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++C + F ++  L  H++ H
  Gorai.009G124600.1 107 FSCNYCQRKFYSSQALGGHQNAH 129
                         89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.25E-6103134No hitNo description
PROSITE profilePS5015711.427107134IPR007087Zinc finger, C2H2
PROSITE patternPS000280109129IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MKPPKPSEPS LSETSTIISV SPAATLTTSA HDNTTLKQDK QPAAEAKEEA THHQGVDDDL  60
VLDLRLSNRD QSNPELNFID CFKADLSGDQ DSSELPPQGN ETEPRVFSCN YCQRKFYSSQ  120
ALGGHQNAHK RERTLAKRGQ RLGGGAAAAS LSAFGYPNTH PSRYSSLASL PLYGSFNKAL  180
GIREHSMIHK PSLVPSAHVY GHNGWSRRAV DQTRAVGHVS NLQGINGTAK FQGSVGKFGP  240
ATEGMNGHWW DTVNHFNNKK DELKLDLSLK L*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3940975e-66GQ394097.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS1062 SSR marker CGR6530 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012440674.10.0PREDICTED: zinc finger protein 1
TrEMBLA0A0D2UL070.0A0A0D2UL07_G
STRINGVIT_09s0002g09080.t015e-85(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18932771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.16e-37zinc-finger protein 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]